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IGVFFI5343SBVQ

released
validated
File Set
IGVFDS4752BWME(single-cell RNA sequencing assay (SHARE-seq))
Summary
seqspec of IGVFFI1714BGQB, IGVFFI4097NVZS
File Format
yaml
Content Type
seqspec
Aliases
buenrostro-bernstein:SS-LS_7379_seqspec
md5sum
5835a18161452d408f4f338cee6a36b2
Content MD5sum
7cfb95bc98c6ea4e74feb3cc3279a741
File Size
1.3 KB
Submitted File Name
gs://sw-igvf-submission/seqspec-v3/pilot-mouse-brain-new-pkr/SS-LS_7379_seqspec.yaml.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

seqspec File Of

2 items
Read Names
fastq
reads
7379
Read 1
22KFF5LT3
7.9 GB
Jason Buenrostro, Broad
validated
fastq
reads
7379
Read 2, Barcode index
22KFF5LT3
14 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)

Files Derived From This File

2 items
tar
kallisto single cell RNAseq output
unfiltered cell by gene in kallisto single cell RNAseq output
Jason Buenrostro, Broad
6.8 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
1.2 GB
validated