IGVFFI5319KROM

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI5319KROM/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI5319KROM",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp5_multi_10x2_NGS4"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "4b7ddd3a69b15ea447b00760359497db",
    "content_type": "seqspec",
    "creation_timestamp": "2024-09-18T02:39:57.470811+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/auxiliary-sets/IGVFDS5515DQMD/",
        "accession": "IGVFDS5515DQMD",
        "file_set_type": "lipid-conjugated oligo sequencing",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM3202SKCS/",
                "accession": "IGVFSM3202SKCS",
                "classifications": [
                    "cell line",
                    "differentiated cell specimen",
                    "gastruloid",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0001184/",
                        "status": "released",
                        "term_name": "HEK293T"
                    },
                    {
                        "@id": "/sample-terms/EFO_0003042/",
                        "status": "released",
                        "term_name": "H1-hESC"
                    },
                    {
                        "@id": "/sample-terms/EFO_0003045/",
                        "status": "released",
                        "term_name": "H9"
                    },
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
    },
    "file_size": 1337,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI5319KROM/@@download/IGVFFI5319KROM.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "ef12b878c6613ab738ba8787174dbfcc",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:11:54.817160+00:00",
    "s3_uri": "s3://igvf-files/2024/09/18/17805d27-7f1b-4edc-9fad-c78b07e82e2b/IGVFFI5319KROM.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI1360MOLY/",
        "/sequence-files/IGVFFI4280LVZR/",
        "/sequence-files/IGVFFI3998XKPU/",
        "/sequence-files/IGVFFI6507ITBP/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp5_multi_10x2_NGS4_multi_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI1360MOLY, IGVFFI4280LVZR, IGVFFI3998XKPU, IGVFFI6507ITBP",
    "upload_status": "validated",
    "uuid": "17805d27-7f1b-4edc-9fad-c78b07e82e2b",
    "validate_onlist_files": false
}