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IGVFFI5301LVOU

released
validated
File Set
IGVFDS4057PFBU(gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
seqspec of IGVFFI7212KPPW, IGVFFI7745NNEZ, IGVFFI8620YJXA
File Format
yaml
Content Type
seqspec
Aliases
jesse-engreitz:seqspecfile_crispr_CRUDO_TAPseq_Auxin6hrs-Rep2-S4
md5sum
7fec665b48ba2ebf9eacb952c99e59ef
Content MD5sum
c928e8b9515c5c0886aa5ec5b383c0b4
File Size
1.2 KB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin6hrs-Rep2-S4.crispr.yaml.gz

seqspec File Of

3 items
fastq
reads
1
4
74 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
4
23 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
4
133 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford