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INDEXED
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IGVFFI5256WWUW
IGVFFI5256WWUW
released
validated
Json view
File Set
IGVFDS0504BMLR
(lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI0430DFXP, IGVFFI6002DJEF, IGVFFI8003FLFU, IGVFFI0138HQBW
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp17_multi_10x1_NGS3
md5sum
3a65aeac5f0601a404a0a5633fa0e324
Content MD5sum
e37ec542df0ccb2f51e2ea96dec2f07e
File Size
1.3 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp17_multi_10x1_NGS3_multi_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0138HQBW
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
7
60 MB
Ansuman Satpathy, Stanford
validated
IGVFFI0430DFXP
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
7
205 MB
Ansuman Satpathy, Stanford
validated
IGVFFI6002DJEF
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
7
466 MB
Ansuman Satpathy, Stanford
validated
IGVFFI8003FLFU
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
7
84 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7909ETQJ
MultiplexedSample
RUES2
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford