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INDEXED
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ConfigurationFile
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IGVFFI5240FHWV
IGVFFI5240FHWV
released
validated
Json view
File Set
IGVFDS4602PSGH
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI1151KCUN, IGVFFI9225CPLO, IGVFFI5612HYQO, IGVFFI1566PTCH
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp3_rna_10x2_NGS1
md5sum
6bad262528b785ce585db9a851b90c1e
Content MD5sum
befa5ba41117829730c27ac930cacb99
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp3_rna_10x2_NGS1_rna_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1151KCUN
fastq
reads
1
Read 2
Illumina NovaSeq X
223JJCLT3
1
11 GB
Ansuman Satpathy, Stanford
validated
IGVFFI1566PTCH
fastq
reads
1
Illumina NovaSeq X
223JJCLT3
1
1.4 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5612HYQO
fastq
reads
1
Read 1
Illumina NovaSeq X
223JJCLT3
1
5.2 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9225CPLO
fastq
reads
1
Illumina NovaSeq X
223JJCLT3
1
1.4 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM8818QZOF
MultiplexedSample
GM25256 (WTC-11)
,
H9
,
HepG2
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford