IGVFFI5052BWAV

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI5052BWAV/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5052BWAV",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "checkfiles_version": "v17",
19    "content_md5sum": "2f532e56e883708c3f074b9a7e88f67f",
20    "content_type": "seqspec",
21    "creation_timestamp": "2024-09-16T17:25:26.087812+00:00",
22    "file_format": "yaml",
23    "file_set": {
24        "@id": "/measurement-sets/IGVFDS2225MFRS/",
25        "@type": [
26            "MeasurementSet",
27            "FileSet",
28            "Item"
29        ],
30        "accession": "IGVFDS2225MFRS",
31        "assay_term": {
32            "@id": "/assay-terms/OBI_0003109/",
33            "term_name": "single-nucleus RNA sequencing assay"
34        },
35        "data_use_limitation_summaries": [
36            "no certificate"
37        ],
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/multiplexed-samples/IGVFSM2909LQXK/",
42                "@type": [
43                    "MultiplexedSample",
44                    "Sample",
45                    "Item"
46                ],
47                "accession": "IGVFSM2909LQXK",
48                "classifications": [
49                    "tissue",
50                    "multiplexed sample"
51                ],
52                "disease_terms": [],
53                "modifications": [],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/UBERON_0000948/",
57                        "status": "released",
58                        "term_name": "heart"
59                    },
60                    {
61                        "@id": "/sample-terms/UBERON_0002107/",
62                        "status": "released",
63                        "term_name": "liver"
64                    }
65                ],
66                "status": "released",
67                "summary": "multiplexed sample: Mus musculus CAST/EiJ (male, 69 days) liver tissue; Mus musculus 129S1J (female, 72 days) heart tissue; ... and 126 more samples",
68                "taxa": "Mus musculus",
69                "treatments": []
70            }
71        ],
72        "status": "released",
73        "summary": "Parse SPLiT-seq"
74    },
75    "file_size": 1351,
76    "gene_list_for": [],
77    "href": "/configuration-files/IGVFFI5052BWAV/@@download/IGVFFI5052BWAV.yaml.gz",
78    "input_file_for": [],
79    "integrated_in": [],
80    "lab": {
81        "@id": "/labs/ali-mortazavi/",
82        "title": "Ali Mortazavi, UCI"
83    },
84    "loci_list_for": [],
85    "md5sum": "9e6022a0a4754fba37f49ba937f455ad",
86    "quality_metrics": [],
87    "release_timestamp": "2025-04-18T22:52:14.560110+00:00",
88    "s3_uri": "s3://igvf-files/2024/09/16/100bd0cb-6cc8-42ec-9c37-d5f74437bd0f/IGVFFI5052BWAV.yaml.gz",
89    "schema_version": "7",
90    "seqspec_of": [
91        "/sequence-files/IGVFFI4297EFRE/",
92        "/sequence-files/IGVFFI3359COEH/"
93    ],
94    "status": "released",
95    "submitted_by": {
96        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
97        "title": "Diane Trout"
98    },
99    "summary": "seqspec of IGVFFI4297EFRE, IGVFFI3359COEH",
100    "upload_status": "validated",
101    "uuid": "100bd0cb-6cc8-42ec-9c37-d5f74437bd0f",
102    "validate_onlist_files": true
103}