IGVFFI5045HRAK

released
validation exempted
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI5045HRAK/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5045HRAK",
10    "assay_titles": [
11        "lentiMPRA"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG011966/",
16        "component": "functional characterization"
17    },
18    "content_md5sum": "37af261977b50302b1bf801e31e9ff52",
19    "content_type": "seqspec",
20    "creation_timestamp": "2024-12-19T12:25:09.731512+00:00",
21    "derived_from": [
22        "/tabular-files/IGVFFI6803EINC/"
23    ],
24    "description": "Sequence specification of HEK293T DNA counts",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/auxiliary-sets/IGVFDS5798HAUC/",
28        "@type": [
29            "AuxiliarySet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS5798HAUC",
34        "file_set_type": "quantification DNA barcode sequencing",
35        "status": "released",
36        "summary": "quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide"
37    },
38    "file_size": 1793,
39    "gene_list_for": [],
40    "href": "/configuration-files/IGVFFI5045HRAK/@@download/IGVFFI5045HRAK.yaml.gz",
41    "input_file_for": [],
42    "integrated_in": [],
43    "lab": {
44        "@id": "/labs/nadav-ahituv/",
45        "title": "Nadav Ahituv, UCSF"
46    },
47    "loci_list_for": [],
48    "md5sum": "ead2692615e737e8ecc96b97b897ee39",
49    "quality_metrics": [],
50    "release_timestamp": "2025-01-30T17:46:54.046547+00:00",
51    "s3_uri": "s3://igvf-files/2024/12/19/43d79061-01ff-404e-a576-d4aabf180d10/IGVFFI5045HRAK.yaml.gz",
52    "schema_version": "7",
53    "seqspec_of": [
54        "/sequence-files/IGVFFI0745BZJW/",
55        "/sequence-files/IGVFFI3315BUYG/",
56        "/sequence-files/IGVFFI8699ZPZT/",
57        "/sequence-files/IGVFFI8821TPBU/",
58        "/sequence-files/IGVFFI8978OOBC/",
59        "/sequence-files/IGVFFI4744IBKS/",
60        "/sequence-files/IGVFFI3494FIPR/",
61        "/sequence-files/IGVFFI7895RSMK/",
62        "/sequence-files/IGVFFI3917RLFW/",
63        "/sequence-files/IGVFFI6204YNLN/",
64        "/sequence-files/IGVFFI7646DGAU/",
65        "/sequence-files/IGVFFI6913ZHZQ/"
66    ],
67    "status": "released",
68    "submitted_by": {
69        "@id": "/users/3ad3479d-753b-4293-9c09-c0dcabfd0ddb/",
70        "title": "Max Schubach"
71    },
72    "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/proximalPromotor/count/seqspec/IGVF_shendure_progReg_HEK293T_count_rep2_dna.yaml.gz\"",
73    "submitter_comment": "\"This file was previously validated by legacy checkfiles and is seqspec v0.3.0. It is now local checkfiles V17 validated, patched to be validation exempted as a part of portal-wide seqspec updating effort.\"",
74    "summary": "seqspec of IGVFFI0745BZJW, IGVFFI3315BUYG, IGVFFI8699ZPZT, IGVFFI8821TPBU, IGVFFI8978OOBC, IGVFFI4744IBKS, IGVFFI3494FIPR, IGVFFI7895RSMK, IGVFFI3917RLFW, IGVFFI6204YNLN, IGVFFI7646DGAU, IGVFFI6913ZHZQ",
75    "upload_status": "validation exempted",
76    "uuid": "43d79061-01ff-404e-a576-d4aabf180d10",
77    "validate_onlist_files": false
78}