IGVFFI5040VZOV

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI5040VZOV/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5040VZOV",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_8498_seqspec"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "ac30c12b909e298cbab4c4e18968a8b8",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-28T18:17:06.170489+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS8305QDVA/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS8305QDVA",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002764/",
36            "term_name": "single-cell ATAC-seq"
37        },
38        "controlled_access": true,
39        "data_use_limitation_summaries": [
40            "GRU"
41        ],
42        "file_set_type": "experimental data",
43        "samples": [
44            {
45                "@id": "/in-vitro-systems/IGVFSM6548PKFU/",
46                "@type": [
47                    "InVitroSystem",
48                    "Biosample",
49                    "Sample",
50                    "Item"
51                ],
52                "accession": "IGVFSM6548PKFU",
53                "classifications": [
54                    "pooled cell specimen",
55                    "differentiated cell specimen"
56                ],
57                "sample_terms": [
58                    {
59                        "@id": "/sample-terms/EFO_0004905/",
60                        "status": "released",
61                        "term_name": "induced pluripotent stem cell"
62                    }
63                ],
64                "status": "released",
65                "summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 188)",
66                "targeted_sample_term": {
67                    "@id": "/sample-terms/CL_0002196/",
68                    "status": "released",
69                    "term_name": "hepatic oval stem cell"
70                },
71                "taxa": "Homo sapiens"
72            }
73        ],
74        "status": "released",
75        "summary": "single-cell ATAC-seq (SHARE-seq)"
76    },
77    "file_size": 1329,
78    "gene_list_for": [],
79    "href": "/configuration-files/IGVFFI5040VZOV/@@download/IGVFFI5040VZOV.yaml.gz",
80    "input_file_for": [],
81    "integrated_in": [],
82    "lab": {
83        "@id": "/labs/jason-buenrostro/",
84        "title": "Jason Buenrostro, Broad"
85    },
86    "loci_list_for": [],
87    "md5sum": "10ef3f87ce1c62201a3ad9821f6bcfe2",
88    "quality_metrics": [],
89    "release_timestamp": "2025-04-22T04:05:03.834753+00:00",
90    "s3_uri": "s3://igvf-files/2025/03/28/3fa74f1f-2f6f-48ef-b7b1-a736c06a5fdd/IGVFFI5040VZOV.yaml.gz",
91    "schema_version": "7",
92    "seqspec_of": [
93        "/sequence-files/IGVFFI1540RPTA/",
94        "/sequence-files/IGVFFI3831QQDQ/",
95        "/sequence-files/IGVFFI3428ZJOP/"
96    ],
97    "status": "released",
98    "submitted_by": {
99        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
100        "title": "Siddarth Wekhande"
101    },
102    "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI1540RPTA_seqspec.yaml.gz",
103    "summary": "seqspec of IGVFFI1540RPTA, IGVFFI3831QQDQ, IGVFFI3428ZJOP",
104    "upload_status": "validated",
105    "uuid": "3fa74f1f-2f6f-48ef-b7b1-a736c06a5fdd",
106    "validate_onlist_files": true
107}