Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Resources
Data Model
About
Help
Sign In
INDEXED
Home
/
ConfigurationFile
/
IGVFFI4982DZUO
IGVFFI4982DZUO
released
validated
Json view
File Set
IGVFDS7359TFTN
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI4141LYRL, IGVFFI0308JCQR, IGVFFI1317ZWHM, IGVFFI9939CNBA
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp12_atac_10x2_NGS4
md5sum
f781c8a3f56f95ccfd0c114c7fbe7302
Content MD5sum
c215d7febe0a3c04de865b02dd364a7a
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x2_NGS4_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0308JCQR
fastq
reads
1
Barcode index
Illumina NovaSeq X
225JTGLT3
4
2.8 GB
Ansuman Satpathy, Stanford
validated
IGVFFI1317ZWHM
fastq
reads
1
Read 1
Illumina NovaSeq X
225JTGLT3
4
5.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4141LYRL
fastq
reads
1
Read 2
Illumina NovaSeq X
225JTGLT3
4
5.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9939CNBA
fastq
reads
1
Illumina NovaSeq X
225JTGLT3
4
1.1 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5189FTFS
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford