Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Resources
Data Model
About
Help
Sign In
INDEXED
Home
/
ConfigurationFile
/
IGVFFI4952QNRC
IGVFFI4952QNRC
released
validated
Json view
File Set
IGVFDS1983YORK
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI6355VMWV, IGVFFI3275VTUD, IGVFFI5028GFCX, IGVFFI7635BTOG
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp3_rna_10x3_NGS1
md5sum
8cd5d427d50fa63f8ea39ea724e13cc6
Content MD5sum
bc955b069215e4a59cc37b4bb1de978d
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp3_rna_10x3_NGS1_rna_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI3275VTUD
fastq
reads
1
Illumina NovaSeq X
223JJCLT3
1
1.4 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5028GFCX
fastq
reads
1
Read 2
Illumina NovaSeq X
223JJCLT3
1
11 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6355VMWV
fastq
reads
1
Illumina NovaSeq X
223JJCLT3
1
1.5 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7635BTOG
fastq
reads
1
Read 1
Illumina NovaSeq X
223JJCLT3
1
5.2 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7454SJSO
MultiplexedSample
GM25256 (WTC-11)
,
H9
,
HepG2
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford