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INDEXED
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ConfigurationFile
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IGVFFI4928KJRE
IGVFFI4928KJRE
released
validated
Json view
File Set
IGVFDS1824DNGD
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI7980SPCZ, IGVFFI2420PDXE, IGVFFI2600SVRW, IGVFFI7782QPFL
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp11_atac_10x4_NGS2
md5sum
2fbd3b398407b4325292f2440553bcf5
Content MD5sum
6f918a209f151608ae2d6cd67a97ddce
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp11_atac_10x4_NGS2_atac_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2420PDXE
fastq
reads
1
Read 2
Illumina NovaSeq X
225L7NLT3
2
5.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2600SVRW
fastq
reads
1
Read 1
Illumina NovaSeq X
225L7NLT3
2
5.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7782QPFL
fastq
reads
1
Barcode index
Illumina NovaSeq X
225L7NLT3
2
2.7 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7980SPCZ
fastq
reads
1
Illumina NovaSeq X
225L7NLT3
2
1.2 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM8200CKYL
MultiplexedSample
GM25256 (WTC-11)
,
H7-hESC
multiplexed sample: Homo sapiens (female) H7-hESC differentiated cell specimen; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days; ... and 10 more samples