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INDEXED
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ConfigurationFile
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IGVFFI4678MLGO
IGVFFI4678MLGO
released
validated
Json view
File Set
IGVFDS1555ZQOW
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI1415ZCCR, IGVFFI9193AKLW, IGVFFI4166FQWH, IGVFFI9476DBSV
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp1_atac_10x1_NGS1
md5sum
5446167425300de3087c4d6ad6490914
Content MD5sum
62e788d0b61b178c7a9a44b01cdba60b
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp1_atac_10x1_NGS1_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1415ZCCR
fastq
reads
1
Read 1
Illumina NovaSeq X
2257H3LT3
7
8.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4166FQWH
fastq
reads
1
Read 2
Illumina NovaSeq X
2257H3LT3
7
8.5 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9193AKLW
fastq
reads
1
Barcode index
Illumina NovaSeq X
2257H3LT3
7
4.7 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9476DBSV
fastq
reads
1
Illumina NovaSeq X
2257H3LT3
7
1.9 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4662QKFQ
MultiplexedSample
HAP-1
,
HL-60
,
HUDEP-2
,
K562
,
U2OS
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford