IGVFFI4678GDCD

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI4678GDCD/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4678GDCD",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_exp12_atac_10x1_NGS2"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "5a49b43d49551a1a8f68959e03e0e56d",
23    "content_type": "seqspec",
24    "creation_timestamp": "2024-09-18T02:24:17.819041+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS8103FALC/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS8103FALC",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002762/",
36            "term_name": "single-nucleus ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/multiplexed-samples/IGVFSM3641EGVH/",
42                "@type": [
43                    "MultiplexedSample",
44                    "Sample",
45                    "Item"
46                ],
47                "accession": "IGVFSM3641EGVH",
48                "classifications": [
49                    "differentiated cell specimen",
50                    "tissue",
51                    "multiplexed sample"
52                ],
53                "disease_terms": [],
54                "modifications": [],
55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/CL_0000236/",
58                        "status": "released",
59                        "term_name": "B cell"
60                    },
61                    {
62                        "@id": "/sample-terms/UBERON_0002371/",
63                        "status": "released",
64                        "term_name": "bone marrow"
65                    }
66                ],
67                "status": "released",
68                "summary": "multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples",
69                "taxa": "Homo sapiens",
70                "treatments": []
71            }
72        ],
73        "status": "released",
74        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
75    },
76    "file_size": 1378,
77    "gene_list_for": [],
78    "href": "/configuration-files/IGVFFI4678GDCD/@@download/IGVFFI4678GDCD.yaml.gz",
79    "input_file_for": [],
80    "integrated_in": [],
81    "lab": {
82        "@id": "/labs/ansuman-satpathy/",
83        "title": "Ansuman Satpathy, Stanford"
84    },
85    "loci_list_for": [],
86    "md5sum": "09a2b7dbaef7a9dcd14a40c9e067dd99",
87    "quality_metrics": [],
88    "release_timestamp": "2025-03-22T00:40:11.144064+00:00",
89    "s3_uri": "s3://igvf-files/2024/09/18/e9f52f86-ac62-4605-82aa-928ea9f4d66d/IGVFFI4678GDCD.yaml.gz",
90    "schema_version": "7",
91    "seqspec_of": [
92        "/sequence-files/IGVFFI8075FHDU/",
93        "/sequence-files/IGVFFI9936FPMA/",
94        "/sequence-files/IGVFFI2982EDZQ/",
95        "/sequence-files/IGVFFI8752LXSX/"
96    ],
97    "status": "released",
98    "submitted_by": {
99        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
100        "title": "Christopher Mcginnis"
101    },
102    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x1_NGS2_atac_seqspec.yaml.gz",
103    "summary": "seqspec of IGVFFI8075FHDU, IGVFFI9936FPMA, IGVFFI2982EDZQ, IGVFFI8752LXSX",
104    "upload_status": "validated",
105    "uuid": "e9f52f86-ac62-4605-82aa-928ea9f4d66d",
106    "validate_onlist_files": true
107}