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INDEXED
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ConfigurationFile
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IGVFFI4613KEDZ
IGVFFI4613KEDZ
released
validated
Json view
File Set
IGVFDS2872HKZZ
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI9637RUTI, IGVFFI8161TCGC, IGVFFI1706KSYK, IGVFFI4292KEDY
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp15_atac_10x2_NGS2
md5sum
bcdf70e32b80be8b3a4a6afa294440da
Content MD5sum
6e5785ebcbb8e44ed6589566d670da32
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp15_atac_10x2_NGS2_atac_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG011972
—
Jesse Engreitz
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1706KSYK
fastq
reads
1
Read 2
Illumina NovaSeq X
22NHMTLT3
3
11 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4292KEDY
fastq
reads
1
Illumina NovaSeq X
22NHMTLT3
3
2.5 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8161TCGC
fastq
reads
1
Barcode index
Illumina NovaSeq X
22NHMTLT3
3
6.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9637RUTI
fastq
reads
1
Read 1
Illumina NovaSeq X
22NHMTLT3
3
11 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0825LHRL
MultiplexedSample
GM25256 (WTC-11)
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples