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INDEXED
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ConfigurationFile
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IGVFFI4431UQYM
IGVFFI4431UQYM
released
validated
Json view
File Set
IGVFDS5862OZVJ
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI9937KBOI, IGVFFI0853LWPK, IGVFFI9753WZLX, IGVFFI9521KOKY
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp12_rna_10x3_NGS4
md5sum
95edd611d2ac5d13dd52d615b83d977c
Content MD5sum
28e761e0d3ca07e55e7fc6ad139f9ee4
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_rna_10x3_NGS4_rna_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0853LWPK
fastq
reads
1
Read 1
Illumina NovaSeq X
225LWLLT3
4
3.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9521KOKY
fastq
reads
1
Illumina NovaSeq X
225LWLLT3
4
1.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9753WZLX
fastq
reads
1
Read 2
Illumina NovaSeq X
225LWLLT3
4
7.9 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9937KBOI
fastq
reads
1
Illumina NovaSeq X
225LWLLT3
4
1.2 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7114MTSH
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples