IGVFFI4298IIZN

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI4298IIZN/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4298IIZN",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_exp15_rna_10x1_NGS2"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011972/",
19        "component": "functional characterization"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "fa1b11c14662b9ff2d2adbe6d1abe6e0",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-02-26T01:44:42.777639+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS2623QODS/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS2623QODS",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0003109/",
36            "term_name": "single-nucleus RNA sequencing assay"
37        },
38        "controlled_access": false,
39        "data_use_limitation_summaries": [
40            "No limitations"
41        ],
42        "file_set_type": "experimental data",
43        "samples": [
44            {
45                "@id": "/multiplexed-samples/IGVFSM2174QALS/",
46                "@type": [
47                    "MultiplexedSample",
48                    "Sample",
49                    "Item"
50                ],
51                "accession": "IGVFSM2174QALS",
52                "classifications": [
53                    "differentiated cell specimen",
54                    "multiplexed sample"
55                ],
56                "disease_terms": [],
57                "modifications": [],
58                "sample_terms": [
59                    {
60                        "@id": "/sample-terms/EFO_0009747/",
61                        "status": "released",
62                        "term_name": "GM25256 (WTC-11)"
63                    }
64                ],
65                "status": "released",
66                "summary": "multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples",
67                "taxa": "Homo sapiens",
68                "treatments": []
69            }
70        ],
71        "status": "released",
72        "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
73    },
74    "file_size": 1396,
75    "gene_list_for": [],
76    "href": "/configuration-files/IGVFFI4298IIZN/@@download/IGVFFI4298IIZN.yaml.gz",
77    "input_file_for": [],
78    "integrated_in": [],
79    "lab": {
80        "@id": "/labs/ansuman-satpathy/",
81        "title": "Ansuman Satpathy, Stanford"
82    },
83    "loci_list_for": [],
84    "md5sum": "69dbd4d8de7df4d0ccde8c1be54b6d30",
85    "quality_metrics": [],
86    "release_timestamp": "2025-03-07T01:15:03.245511+00:00",
87    "s3_uri": "s3://igvf-files/2025/02/26/691bedd0-82b6-4093-a44b-5ba897afbb81/IGVFFI4298IIZN.yaml.gz",
88    "schema_version": "7",
89    "seqspec_of": [
90        "/sequence-files/IGVFFI1830GJBO/",
91        "/sequence-files/IGVFFI4542ISGP/",
92        "/sequence-files/IGVFFI3835VFVF/",
93        "/sequence-files/IGVFFI1508WDYW/"
94    ],
95    "status": "released",
96    "submitted_by": {
97        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
98        "title": "Christopher Mcginnis"
99    },
100    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp15_rna_10x1_NGS2_rna_seqspec.yaml.gz",
101    "summary": "seqspec of IGVFFI1830GJBO, IGVFFI4542ISGP, IGVFFI3835VFVF, IGVFFI1508WDYW",
102    "upload_status": "validated",
103    "uuid": "691bedd0-82b6-4093-a44b-5ba897afbb81",
104    "validate_onlist_files": true
105}