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IGVFFI4295FGJK

released
validation exempted
File Set
IGVFDS5533XJRU(gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
seqspec of IGVFFI7666EOCK, IGVFFI2954POWQ, IGVFFI7012CCWR
File Format
yaml
Content Type
seqspec
Aliases
jesse-engreitz:seqspecfile_crispr_CRUDO_TAPseq_Auxin6hrs-Rep1-S1
md5sum
27f1aa9bea9d954b1630cf9c5216e563
Content MD5sum
ea478e57c7fd3846c147902e999c5410
File Size
1.2 KB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin6hrs-Rep1-S1.crispr.yaml.gz
Checkfiles Version
No version due to exemption
Attribution
Jesse Engreitz, Stanford

seqspec File Of

3 items
Read Names
fastq
reads
1
1
74 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
1
413 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
1
225 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) HCT116 cell line treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library