IGVFFI4250OFWO

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI4250OFWO/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4250OFWO",
10    "aliases": [
11        "chongyuan-luo:ys3a_snATAC_L2_seqspec"
12    ],
13    "assay_titles": [
14        "10x multiome"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012079/",
19        "component": "networks"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "06f66b54afee56f0b533e549b7eaf778",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-19T00:08:38.513705+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS1459GLSU/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS1459GLSU",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002762/",
36            "term_name": "single-nucleus ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/multiplexed-samples/IGVFSM4163HHQB/",
42                "@type": [
43                    "MultiplexedSample",
44                    "Sample",
45                    "Item"
46                ],
47                "accession": "IGVFSM4163HHQB",
48                "classifications": [
49                    "primary cell",
50                    "reprogrammed cell specimen",
51                    "multiplexed sample"
52                ],
53                "disease_terms": [],
54                "modifications": [],
55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/CL_0000057/",
58                        "status": "released",
59                        "term_name": "fibroblast"
60                    }
61                ],
62                "status": "released",
63                "summary": "multiplexed sample: Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days; Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 5 days; ... and 2 more samples",
64                "taxa": "Homo sapiens",
65                "treatments": []
66            }
67        ],
68        "status": "released",
69        "summary": "single-nucleus ATAC-seq (10x multiome)"
70    },
71    "file_size": 1295,
72    "gene_list_for": [],
73    "href": "/configuration-files/IGVFFI4250OFWO/@@download/IGVFFI4250OFWO.yaml.gz",
74    "input_file_for": [],
75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/kathrin-plath/",
78        "title": "Kathrin Plath, UCLA"
79    },
80    "loci_list_for": [],
81    "md5sum": "30eca0b5ceeb82a4159d238ecb3237c3",
82    "quality_metrics": [],
83    "release_timestamp": "2025-03-27T21:33:07.934996+00:00",
84    "s3_uri": "s3://igvf-files/2025/03/19/19ff0da5-8624-479e-a505-d8fd6dcbc327/IGVFFI4250OFWO.yaml.gz",
85    "schema_version": "7",
86    "seqspec_of": [
87        "/sequence-files/IGVFFI7693RSEM/",
88        "/sequence-files/IGVFFI8322BHJU/",
89        "/sequence-files/IGVFFI3348FEAV/",
90        "/sequence-files/IGVFFI5187ELPT/"
91    ],
92    "status": "released",
93    "submitted_by": {
94        "@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
95        "title": "Terence Li"
96    },
97    "submitted_file_name": "/home/ec2-user/igvf/submit/yaml/year2/multiome/atac/ys3a.L2.yaml.gz",
98    "summary": "seqspec of IGVFFI7693RSEM, IGVFFI8322BHJU, IGVFFI3348FEAV, IGVFFI5187ELPT",
99    "upload_status": "validated",
100    "uuid": "19ff0da5-8624-479e-a505-d8fd6dcbc327",
101    "validate_onlist_files": true
102}