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IGVFFI4193MBYM

released
validated
File Set
IGVFDS4834SKZS(gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci)
Summary
seqspec of IGVFFI3777QEJF, IGVFFI2735DIDC, IGVFFI6797WWMA
File Format
yaml
Content Type
seqspec
Aliases
jay-shendure:CRISPRa_singlecell_K562_VPR_10Xlane2_seqlane1_CS1_seqspec
md5sum
5e3f5cb1cf0681b081b8fa9fbfdfad84
Content MD5sum
b31f8d677db85cb1ad1cd6a45d94dfb2
File Size
1.4 KB
Submitted File Name
/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/CRISPRa/CRISPRa_IGVFDS4834SKZS_1_CS1_seqspec_v3.yaml.gz
Checkfiles Version
v20
Attribution
Jay Shendure, UW

seqspec File Of

3 items
Read Names
fastq
reads
1
Read 1
AAAHG2HHV
1
873 MB
Jay Shendure, UW
validated
fastq
reads
1
AAAHG2HHV
1
319 MB
Jay Shendure, UW
validated
fastq
reads
1
Read 2
AAAHG2HHV
1
1.6 GB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line (cellular sub pool: 10Xlane2) modified with CRISPRa Sp-dCas9-VP64-p65-Rta (VPR), transfected with a guide library