IGVFFI4120EDXM

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI4120EDXM/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4120EDXM",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_exp2_multi_10x1_NGS1"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "2aba33e2fd399b30a8a01371674df92d",
23    "content_type": "seqspec",
24    "creation_timestamp": "2024-09-18T02:35:44.452698+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/auxiliary-sets/IGVFDS9860EXKL/",
28        "@type": [
29            "AuxiliarySet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS9860EXKL",
34        "file_set_type": "lipid-conjugated oligo sequencing",
35        "samples": [
36            {
37                "@id": "/multiplexed-samples/IGVFSM3646QLDO/",
38                "@type": [
39                    "MultiplexedSample",
40                    "Sample",
41                    "Item"
42                ],
43                "accession": "IGVFSM3646QLDO",
44                "classifications": [
45                    "cell line",
46                    "multiplexed sample"
47                ],
48                "disease_terms": [],
49                "modifications": [],
50                "sample_terms": [
51                    {
52                        "@id": "/sample-terms/NTR_0000753/",
53                        "status": "released",
54                        "term_name": "TeloHAEC"
55                    }
56                ],
57                "status": "released",
58                "summary": "multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples",
59                "taxa": "Homo sapiens",
60                "treatments": [
61                    {
62                        "@id": "/treatments/d2d49540-dd91-49e2-b877-ce9aa0af8bb0/",
63                        "purpose": "perturbation",
64                        "status": "in progress",
65                        "summary": "Treatment of 10 ng/mL tumor necrosis factor alpha for 4 hours",
66                        "treatment_term_name": "tumor necrosis factor alpha"
67                    },
68                    {
69                        "@id": "/treatments/de8a9e87-d0e1-4ecb-bc9d-08e61b4ff368/",
70                        "purpose": "perturbation",
71                        "status": "in progress",
72                        "summary": "Treatment of 10 ng/mL tumor necrosis factor alpha for 1 day",
73                        "treatment_term_name": "tumor necrosis factor alpha"
74                    }
75                ]
76            }
77        ],
78        "status": "released",
79        "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
80    },
81    "file_size": 1338,
82    "gene_list_for": [],
83    "href": "/configuration-files/IGVFFI4120EDXM/@@download/IGVFFI4120EDXM.yaml.gz",
84    "input_file_for": [],
85    "integrated_in": [],
86    "lab": {
87        "@id": "/labs/ansuman-satpathy/",
88        "title": "Ansuman Satpathy, Stanford"
89    },
90    "loci_list_for": [],
91    "md5sum": "8170d83813d623959d128c4d946a6824",
92    "quality_metrics": [],
93    "release_timestamp": "2025-03-07T01:10:41.834615+00:00",
94    "s3_uri": "s3://igvf-files/2024/09/18/df5f3cce-3894-4c2f-8745-46e62da3453b/IGVFFI4120EDXM.yaml.gz",
95    "schema_version": "7",
96    "seqspec_of": [
97        "/sequence-files/IGVFFI8462BKYM/",
98        "/sequence-files/IGVFFI6392OPMO/",
99        "/sequence-files/IGVFFI3666KZJE/",
100        "/sequence-files/IGVFFI0292SYVB/"
101    ],
102    "status": "released",
103    "submitted_by": {
104        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
105        "title": "Christopher Mcginnis"
106    },
107    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp2_multi_10x1_NGS1_multi_seqspec.yaml.gz",
108    "summary": "seqspec of IGVFFI8462BKYM, IGVFFI6392OPMO, IGVFFI3666KZJE, IGVFFI0292SYVB",
109    "upload_status": "validated",
110    "uuid": "df5f3cce-3894-4c2f-8745-46e62da3453b",
111    "validate_onlist_files": false
112}