IGVFFI4113BWRJ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI4113BWRJ/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4113BWRJ",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "checkfiles_version": "v17",
19    "content_md5sum": "9fee59f1d34653b5256bf9449d5cc63c",
20    "content_type": "seqspec",
21    "creation_timestamp": "2024-09-18T18:05:50.760085+00:00",
22    "file_format": "yaml",
23    "file_set": {
24        "@id": "/measurement-sets/IGVFDS5202ZKVR/",
25        "@type": [
26            "MeasurementSet",
27            "FileSet",
28            "Item"
29        ],
30        "accession": "IGVFDS5202ZKVR",
31        "assay_term": {
32            "@id": "/assay-terms/OBI_0003109/",
33            "term_name": "single-nucleus RNA sequencing assay"
34        },
35        "file_set_type": "experimental data",
36        "samples": [
37            {
38                "@id": "/multiplexed-samples/IGVFSM1116LSTK/",
39                "@type": [
40                    "MultiplexedSample",
41                    "Sample",
42                    "Item"
43                ],
44                "accession": "IGVFSM1116LSTK",
45                "classifications": [
46                    "tissue",
47                    "multiplexed sample"
48                ],
49                "disease_terms": [],
50                "modifications": [],
51                "sample_terms": [
52                    {
53                        "@id": "/sample-terms/NTR_0000646/",
54                        "status": "released",
55                        "term_name": "left cerebral cortex"
56                    },
57                    {
58                        "@id": "/sample-terms/NTR_0000647/",
59                        "status": "released",
60                        "term_name": "right cerebral cortex"
61                    },
62                    {
63                        "@id": "/sample-terms/NTR_0000750/",
64                        "status": "released",
65                        "term_name": "left hippocampal formation"
66                    },
67                    {
68                        "@id": "/sample-terms/NTR_0000751/",
69                        "status": "released",
70                        "term_name": "right hippocampal formation"
71                    },
72                    {
73                        "@id": "/sample-terms/UBERON_0001388/",
74                        "status": "released",
75                        "term_name": "gastrocnemius"
76                    }
77                ],
78                "status": "released",
79                "summary": "multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples",
80                "taxa": "Mus musculus",
81                "treatments": []
82            }
83        ],
84        "status": "released",
85        "summary": "Parse SPLiT-seq"
86    },
87    "file_size": 1354,
88    "gene_list_for": [],
89    "href": "/configuration-files/IGVFFI4113BWRJ/@@download/IGVFFI4113BWRJ.yaml.gz",
90    "input_file_for": [],
91    "integrated_in": [],
92    "lab": {
93        "@id": "/labs/ali-mortazavi/",
94        "title": "Ali Mortazavi, UCI"
95    },
96    "loci_list_for": [],
97    "md5sum": "c4e517f491b9d99c95bcc089de8e2c30",
98    "quality_metrics": [],
99    "release_timestamp": "2025-04-19T01:34:32.532175+00:00",
100    "s3_uri": "s3://igvf-files/2024/09/18/6439d192-5b94-4bf9-970f-84f78e382229/IGVFFI4113BWRJ.yaml.gz",
101    "schema_version": "7",
102    "seqspec_of": [
103        "/sequence-files/IGVFFI6055ZPOC/",
104        "/sequence-files/IGVFFI1382YXDT/"
105    ],
106    "status": "released",
107    "submitted_by": {
108        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
109        "title": "Diane Trout"
110    },
111    "summary": "seqspec of IGVFFI6055ZPOC, IGVFFI1382YXDT",
112    "upload_status": "validated",
113    "uuid": "6439d192-5b94-4bf9-970f-84f78e382229",
114    "validate_onlist_files": true
115}