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IGVFFI4106VMGU
IGVFFI4106VMGU
released
validated
Json view
File Set
IGVFDS8403DDLC
(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
seqspec of IGVFFI2837YQLJ, IGVFFI8111MPTE, IGVFFI9534FGRQ
File Format
yaml
Content Type
seqspec
Aliases
jesse-engreitz:seqspecfile_rna_CRUDO_TAPseq_Auxin6hrs-Rep2-S1
md5sum
833f5378376e810f5fbebf11225dff62
Content MD5sum
dea9bf83d611ce7f01669d5299f91a84
File Size
1.0 KB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin6hrs-Rep2-S1.rna.yaml.gz
seqspec File Of
3 items
Accession
File Format
Content Type
Sequencing Run
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2837YQLJ
fastq
reads
1
Illumina NextSeq 550
1
406 MB
Jesse Engreitz, Stanford
validated
IGVFFI8111MPTE
fastq
reads
1
Illumina NextSeq 550
1
123 MB
Jesse Engreitz, Stanford
validated
IGVFFI9534FGRQ
fastq
reads
1
Illumina NextSeq 550
1
915 MB
Jesse Engreitz, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM8511JOMW
InVitroSystem
HCT116
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford