IGVFFI4099YJAX

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI4099YJAX/",
    "@type": [
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        "File",
        "Item"
    ],
    "accession": "IGVFFI4099YJAX",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_mouse_bridge_116_atac"
    ],
    "assay_titles": [
        "10x multiome"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "7a5a5249fd3796c0a3b2480e37e3d1ed",
    "content_type": "seqspec",
    "creation_timestamp": "2024-09-18T02:46:08.641789+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS1967FHKL/",
        "accession": "IGVFDS1967FHKL",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/tissues/IGVFSM0501LYEC/",
                "accession": "IGVFSM0501LYEC",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "status": "released",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "status": "released",
                "summary": "left cerebral cortex tissue, female, Mus musculus C57BL/6J (10 weeks)",
                "taxa": "Mus musculus"
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome)"
    },
    "file_size": 1381,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI4099YJAX/@@download/IGVFFI4099YJAX.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "302defabb70d1171851fbd30e4822014",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:19:01.789346+00:00",
    "s3_uri": "s3://igvf-files/2024/09/18/65416a98-8f95-4903-8dc6-52a96f7fd13d/IGVFFI4099YJAX.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI0780GMLK/",
        "/sequence-files/IGVFFI7842VQRM/",
        "/sequence-files/IGVFFI9383DDZQ/",
        "/sequence-files/IGVFFI0599BUEC/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_mouse_bridge_116_atac_atac_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI0780GMLK, IGVFFI7842VQRM, IGVFFI9383DDZQ, IGVFFI0599BUEC",
    "upload_status": "validated",
    "uuid": "65416a98-8f95-4903-8dc6-52a96f7fd13d",
    "validate_onlist_files": true
}