IGVFFI3859AKBU

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI3859AKBU/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3859AKBU",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "checkfiles_version": "v17",
19    "content_md5sum": "cacc14bf4eed0ea90e03f8c17d6d7b99",
20    "content_type": "seqspec",
21    "creation_timestamp": "2024-09-17T22:40:01.172417+00:00",
22    "file_format": "yaml",
23    "file_set": {
24        "@id": "/measurement-sets/IGVFDS3799GMAV/",
25        "@type": [
26            "MeasurementSet",
27            "FileSet",
28            "Item"
29        ],
30        "accession": "IGVFDS3799GMAV",
31        "assay_term": {
32            "@id": "/assay-terms/OBI_0003109/",
33            "term_name": "single-nucleus RNA sequencing assay"
34        },
35        "data_use_limitation_summaries": [
36            "no certificate"
37        ],
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/multiplexed-samples/IGVFSM4345ZMKN/",
42                "@type": [
43                    "MultiplexedSample",
44                    "Sample",
45                    "Item"
46                ],
47                "accession": "IGVFSM4345ZMKN",
48                "classifications": [
49                    "tissue",
50                    "multiplexed sample"
51                ],
52                "disease_terms": [],
53                "modifications": [],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/UBERON_0000007/",
57                        "status": "released",
58                        "term_name": "pituitary gland"
59                    },
60                    {
61                        "@id": "/sample-terms/UBERON_0001898/",
62                        "status": "released",
63                        "term_name": "hypothalamus"
64                    },
65                    {
66                        "@id": "/sample-terms/UBERON_0002107/",
67                        "status": "released",
68                        "term_name": "liver"
69                    }
70                ],
71                "status": "released",
72                "summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples",
73                "taxa": "Mus musculus",
74                "treatments": []
75            }
76        ],
77        "status": "released",
78        "summary": "Parse SPLiT-seq"
79    },
80    "file_size": 1350,
81    "gene_list_for": [],
82    "href": "/configuration-files/IGVFFI3859AKBU/@@download/IGVFFI3859AKBU.yaml.gz",
83    "input_file_for": [],
84    "integrated_in": [],
85    "lab": {
86        "@id": "/labs/ali-mortazavi/",
87        "title": "Ali Mortazavi, UCI"
88    },
89    "loci_list_for": [],
90    "md5sum": "047e453ae5bf5eaad133d4cdd3dcc50e",
91    "quality_metrics": [],
92    "release_timestamp": "2025-04-18T23:29:13.865142+00:00",
93    "s3_uri": "s3://igvf-files/2024/09/17/46eb7636-9179-4613-90c9-16d144369567/IGVFFI3859AKBU.yaml.gz",
94    "schema_version": "7",
95    "seqspec_of": [
96        "/sequence-files/IGVFFI5993XTCF/",
97        "/sequence-files/IGVFFI9699OFPS/"
98    ],
99    "status": "released",
100    "submitted_by": {
101        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
102        "title": "Diane Trout"
103    },
104    "summary": "seqspec of IGVFFI5993XTCF, IGVFFI9699OFPS",
105    "upload_status": "validated",
106    "uuid": "46eb7636-9179-4613-90c9-16d144369567",
107    "validate_onlist_files": true
108}