Home

IGVFFI3794HJUX

released
validated
File Set
IGVFDS4502LQQH(gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci)
Summary
seqspec of IGVFFI7570AUYM, IGVFFI3927QEMS, IGVFFI1733REWQ
File Format
yaml
Content Type
seqspec
Aliases
jay-shendure:CRISPRa_singlecell_K562_VP64_10Xlane1_seqlane2_CS1_seqspec
md5sum
b95096d598b569ba7996290395dce476
Content MD5sum
c2436f9a578d423e62e2a3632d32beff
File Size
1.4 KB
Submitted File Name
/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/CRISPRa/CRISPRa_IGVFDS4502LQQH_2_CS1_seqspec_v3.yaml.gz
Checkfiles Version
v20
Attribution
Jay Shendure, UW

seqspec File Of

3 items
Read Names
fastq
reads
1
Read 2
AAAHG2HHV
2
1.3 GB
Jay Shendure, UW
validated
fastq
reads
1
Read 1
AAAHG2HHV
2
846 MB
Jay Shendure, UW
validated
fastq
reads
1
AAAHG2HHV
2
272 MB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line (cellular sub pool: 10Xlane1) modified with CRISPRa Sp-dCas9-VP64, transfected with a guide library