IGVFFI3690KIYA

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI3690KIYA/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3690KIYA",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_exp16_multi_10x3_NGS3"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011972/",
19        "component": "functional characterization"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "64a63af53dafdef2c6de014ff8c09de3",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-02-26T01:36:24.887063+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/auxiliary-sets/IGVFDS1643UTWX/",
28        "@type": [
29            "AuxiliarySet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS1643UTWX",
34        "file_set_type": "lipid-conjugated oligo sequencing",
35        "samples": [
36            {
37                "@id": "/multiplexed-samples/IGVFSM5332SKYG/",
38                "@type": [
39                    "MultiplexedSample",
40                    "Sample",
41                    "Item"
42                ],
43                "accession": "IGVFSM5332SKYG",
44                "classifications": [
45                    "differentiated cell specimen",
46                    "multiplexed sample"
47                ],
48                "disease_terms": [],
49                "modifications": [],
50                "sample_terms": [
51                    {
52                        "@id": "/sample-terms/EFO_0004905/",
53                        "status": "released",
54                        "term_name": "induced pluripotent stem cell"
55                    }
56                ],
57                "status": "released",
58                "summary": "multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples",
59                "taxa": "Homo sapiens",
60                "treatments": []
61            }
62        ],
63        "status": "released",
64        "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
65    },
66    "file_size": 1336,
67    "gene_list_for": [],
68    "href": "/configuration-files/IGVFFI3690KIYA/@@download/IGVFFI3690KIYA.yaml.gz",
69    "input_file_for": [],
70    "integrated_in": [],
71    "lab": {
72        "@id": "/labs/ansuman-satpathy/",
73        "title": "Ansuman Satpathy, Stanford"
74    },
75    "loci_list_for": [],
76    "md5sum": "3422498003fd3277212738998cf17e37",
77    "quality_metrics": [],
78    "release_timestamp": "2025-03-22T00:40:50.279959+00:00",
79    "s3_uri": "s3://igvf-files/2025/02/26/7bae0360-2d29-4d15-834e-10a5100a39b6/IGVFFI3690KIYA.yaml.gz",
80    "schema_version": "7",
81    "seqspec_of": [
82        "/sequence-files/IGVFFI9202JVHW/",
83        "/sequence-files/IGVFFI4880OLHS/",
84        "/sequence-files/IGVFFI7063EFVQ/",
85        "/sequence-files/IGVFFI1968GBYQ/"
86    ],
87    "status": "released",
88    "submitted_by": {
89        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
90        "title": "Christopher Mcginnis"
91    },
92    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp16_multi_10x3_NGS3_multi_seqspec.yaml.gz",
93    "summary": "seqspec of IGVFFI9202JVHW, IGVFFI4880OLHS, IGVFFI7063EFVQ, IGVFFI1968GBYQ",
94    "upload_status": "validated",
95    "uuid": "7bae0360-2d29-4d15-834e-10a5100a39b6",
96    "validate_onlist_files": false
97}