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IGVFFI3677HPJG

released
validated
File Set
IGVFDS8748OHPQ(gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
seqspec of IGVFFI2315CHAW, IGVFFI6297ZONU, IGVFFI1413KOZF
File Format
yaml
Content Type
seqspec
Aliases
jesse-engreitz:seqspecfile_crispr_CRUDO_TAPseq_Auxin0hrs-Rep2-S4
md5sum
ee5ed66a9ff8e00228ca7f8c7b8fcb7e
Content MD5sum
5cda58aa769bda63078828132c44e433
File Size
1.2 KB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin0hrs-Rep2-S4.crispr.yaml.gz

seqspec File Of

3 items
fastq
reads
1
4
141 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
4
77 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
4
25 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford