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INDEXED
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ConfigurationFile
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IGVFFI3665KOMZ
IGVFFI3665KOMZ
released
validated
Json view
File Set
IGVFDS3744SQTD
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI2965VBOB, IGVFFI5800DGQI, IGVFFI9541RVZI, IGVFFI4293NHNU
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp1_rna_10x1_NGS1
md5sum
c87b9fb46b394c5ac9f962dbc0b1b96a
Content MD5sum
e639cb92552ca2771ec7962efdad3c29
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp1_rna_10x1_NGS1_rna_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2965VBOB
fastq
reads
1
Illumina NovaSeq X
2257H3LT3
7
1.5 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4293NHNU
fastq
reads
1
Illumina NovaSeq X
2257H3LT3
7
1.4 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5800DGQI
fastq
reads
1
Read 2
Illumina NovaSeq X
2257H3LT3
7
12 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9541RVZI
fastq
reads
1
Read 1
Illumina NovaSeq X
2257H3LT3
7
5.7 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4662QKFQ
MultiplexedSample
HAP-1
,
HL-60
,
HUDEP-2
,
K562
,
U2OS
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford