IGVFFI3600TXCE

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI3600TXCE/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI3600TXCE",
    "assay_titles": [
        "lentiMPRA"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011966/",
        "component": "functional characterization"
    },
    "content_md5sum": "bc47d7a40c9ca8f848efe20a33ff93cc",
    "content_type": "seqspec",
    "creation_timestamp": "2024-11-22T10:21:28.863403+00:00",
    "derived_from": [
        "/tabular-files/IGVFFI4651HMEA/"
    ],
    "description": "Sequence specification of RNA counts",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS1253DLDL/",
        "accession": "IGVFDS1253DLDL",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM0720XHJA/",
                "accession": "IGVFSM0720XHJA",
                "classifications": [
                    "pooled cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/CL_0011020/",
                        "status": "released",
                        "term_name": "neural progenitor cell"
                    }
                ],
                "status": "released",
                "summary": "neural progenitor pooled cell specimen, Homo sapiens transfected with a reporter library",
                "taxa": "Homo sapiens"
            }
        ],
        "status": "released",
        "summary": "lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder"
    },
    "file_size": 1272,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI3600TXCE/@@download/IGVFFI3600TXCE.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/nadav-ahituv/",
        "title": "Nadav Ahituv, UCSF"
    },
    "loci_list_for": [],
    "md5sum": "c49e101ec24a35a401a04baa047b9ba4",
    "release_timestamp": "2025-01-09T20:34:27.902003+00:00",
    "s3_uri": "s3://igvf-files/2024/11/22/388c7439-5d3f-492d-9725-2ca3c9d5ca19/IGVFFI3600TXCE.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI2104GOOJ/",
        "/sequence-files/IGVFFI1100CEBW/",
        "/sequence-files/IGVFFI5314QYSA/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/3ad3479d-753b-4293-9c09-c0dcabfd0ddb/",
        "title": "Max Schubach"
    },
    "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/counts/seqspec/IGVF_shendure_asd_count_rep1_rna.yaml.gz\"",
    "submitter_comment": "Replicate 1",
    "summary": "seqspec of IGVFFI2104GOOJ, IGVFFI1100CEBW, IGVFFI5314QYSA",
    "upload_status": "validated",
    "uuid": "388c7439-5d3f-492d-9725-2ca3c9d5ca19"
}