IGVFFI3600TXCE

released
validation exempted
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI3600TXCE/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3600TXCE",
10    "assay_titles": [
11        "lentiMPRA"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG011966/",
16        "component": "functional characterization"
17    },
18    "content_md5sum": "bc47d7a40c9ca8f848efe20a33ff93cc",
19    "content_type": "seqspec",
20    "creation_timestamp": "2024-11-22T10:21:28.863403+00:00",
21    "derived_from": [
22        "/tabular-files/IGVFFI4651HMEA/"
23    ],
24    "description": "Sequence specification of RNA counts",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS1253DLDL/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS1253DLDL",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002675/",
36            "term_name": "massively parallel reporter assay"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/in-vitro-systems/IGVFSM0720XHJA/",
42                "@type": [
43                    "InVitroSystem",
44                    "Biosample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM0720XHJA",
49                "classifications": [
50                    "differentiated cell specimen",
51                    "pooled cell specimen"
52                ],
53                "sample_terms": [
54                    {
55                        "@id": "/sample-terms/EFO_0003042/",
56                        "status": "released",
57                        "term_name": "H1-hESC"
58                    }
59                ],
60                "status": "released",
61                "summary": "Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library",
62                "targeted_sample_term": {
63                    "@id": "/sample-terms/CL_0000679/",
64                    "status": "released",
65                    "term_name": "glutamatergic neuron"
66                },
67                "taxa": "Homo sapiens"
68            }
69        ],
70        "status": "released",
71        "summary": "lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder"
72    },
73    "file_size": 1272,
74    "gene_list_for": [],
75    "href": "/configuration-files/IGVFFI3600TXCE/@@download/IGVFFI3600TXCE.yaml.gz",
76    "input_file_for": [],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/nadav-ahituv/",
80        "title": "Nadav Ahituv, UCSF"
81    },
82    "loci_list_for": [],
83    "md5sum": "c49e101ec24a35a401a04baa047b9ba4",
84    "quality_metrics": [],
85    "release_timestamp": "2025-01-09T20:34:27.902003+00:00",
86    "s3_uri": "s3://igvf-files/2024/11/22/388c7439-5d3f-492d-9725-2ca3c9d5ca19/IGVFFI3600TXCE.yaml.gz",
87    "schema_version": "7",
88    "seqspec_of": [
89        "/sequence-files/IGVFFI2104GOOJ/",
90        "/sequence-files/IGVFFI1100CEBW/",
91        "/sequence-files/IGVFFI5314QYSA/"
92    ],
93    "status": "released",
94    "submitted_by": {
95        "@id": "/users/3ad3479d-753b-4293-9c09-c0dcabfd0ddb/",
96        "title": "Max Schubach"
97    },
98    "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/counts/seqspec/IGVF_shendure_asd_count_rep1_rna.yaml.gz\"",
99    "submitter_comment": "\"This file was previously validated by legacy checkfiles and is seqspec v0.3.0. It is now local checkfiles V17 validated, patched to be validation exempted as a part of portal-wide seqspec updating effort.\"",
100    "summary": "seqspec of IGVFFI2104GOOJ, IGVFFI1100CEBW, IGVFFI5314QYSA",
101    "upload_status": "validation exempted",
102    "uuid": "388c7439-5d3f-492d-9725-2ca3c9d5ca19",
103    "validate_onlist_files": false
104}