IGVFFI3573CHEO

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI3573CHEO/",
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6        "File",
7        "Item"
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9    "accession": "IGVFFI3573CHEO",
10    "aliases": [
11        "leif-ludwig:measurement2306820102_scATAC_L001_seqspec"
12    ],
13    "assay_titles": [
14        "10x multiome with scMito-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
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21    "checkfiles_version": "v20",
22    "content_md5sum": "b738df359746ff84dc3e7f477a89804c",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-19T16:11:38.793883+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS8004HLTL/",
28        "@type": [
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31            "Item"
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33        "accession": "IGVFDS8004HLTL",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002764/",
36            "term_name": "single-cell ATAC-seq"
37        },
38        "controlled_access": true,
39        "data_use_limitation_summaries": [
40            "GRU-PUB"
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42        "file_set_type": "experimental data",
43        "samples": [
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45                "@id": "/primary-cells/IGVFSM1838ENPX/",
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48                    "Biosample",
49                    "Sample",
50                    "Item"
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52                "accession": "IGVFSM1838ENPX",
53                "classifications": [
54                    "primary cell"
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56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/CL_2000001/",
59                        "status": "released",
60                        "term_name": "peripheral blood mononuclear cell"
61                    }
62                ],
63                "status": "preview",
64                "summary": "Homo sapiens (male, 26 years) peripheral blood mononuclear cell",
65                "taxa": "Homo sapiens"
66            }
67        ],
68        "status": "preview",
69        "summary": "10x multiome with scMito-seq"
70    },
71    "file_size": 1489,
72    "gene_list_for": [],
73    "href": "/configuration-files/IGVFFI3573CHEO/@@download/IGVFFI3573CHEO.yaml.gz",
74    "input_file_for": [],
75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/leif-ludwig/",
78        "title": "Leif Ludwig, MDC"
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81    "md5sum": "2a0c3ea9cad5e683e6965ca0136e9cab",
82    "quality_metrics": [],
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84    "schema_version": "7",
85    "seqspec_of": [
86        "/sequence-files/IGVFFI7738BJBA/",
87        "/sequence-files/IGVFFI4239RRRS/",
88        "/sequence-files/IGVFFI5232VKKE/"
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90    "status": "preview",
91    "submitted_by": {
92        "@id": "/users/8164e524-79d5-4407-8a75-c0ea353d28ea/",
93        "title": "Ludwig Lab"
94    },
95    "submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2306820102_scATAC_L001.spec.yaml.gz",
96    "summary": "seqspec of IGVFFI7738BJBA, IGVFFI4239RRRS, IGVFFI5232VKKE",
97    "upload_status": "validated",
98    "uuid": "b22d10a6-4420-4e19-bb8a-1206a0987b69",
99    "validate_onlist_files": true
100}