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INDEXED
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ConfigurationFile
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IGVFFI3572ZAHK
IGVFFI3572ZAHK
released
validated
Json view
File Set
IGVFDS2108XESQ
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI9247KOVT, IGVFFI0126DWYC, IGVFFI4857JZLI, IGVFFI0270TTFC
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp9_atac_10x2_NGS1
md5sum
b663c82c06f4b48cd9981c349485136f
Content MD5sum
0f19132223aee3d4df69d957ae7e54c3
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp9_atac_10x2_NGS1_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0126DWYC
fastq
reads
1
Read 2
Illumina NovaSeq X
223JGVLT3
5
12 GB
Ansuman Satpathy, Stanford
validated
IGVFFI0270TTFC
fastq
reads
1
Read 1
Illumina NovaSeq X
223JGVLT3
5
12 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4857JZLI
fastq
reads
1
Barcode index
Illumina NovaSeq X
223JGVLT3
5
6.7 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9247KOVT
fastq
reads
1
Illumina NovaSeq X
223JGVLT3
5
2.7 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2512OHNK
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford