IGVFFI3482LXVK

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI3482LXVK/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3482LXVK",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_5369_seqspec"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v19",
22    "content_md5sum": "2bc1d3a1e55c8ea6a1955e298ac6dbe5",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-13T17:55:00.518393+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS3368OEWN/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS3368OEWN",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002764/",
36            "term_name": "single-cell ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/tissues/IGVFSM1149LLIF/",
42                "@type": [
43                    "Tissue",
44                    "Biosample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM1149LLIF",
49                "classifications": [
50                    "tissue"
51                ],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/UBERON_0000955/",
55                        "status": "released",
56                        "term_name": "brain"
57                    }
58                ],
59                "status": "released",
60                "summary": "Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 432)",
61                "taxa": "Mus musculus"
62            }
63        ],
64        "status": "released",
65        "summary": "single-cell ATAC-seq (SHARE-seq)"
66    },
67    "file_size": 1253,
68    "gene_list_for": [],
69    "href": "/configuration-files/IGVFFI3482LXVK/@@download/IGVFFI3482LXVK.yaml.gz",
70    "input_file_for": [
71        "/tabular-files/IGVFFI5731CAQI/",
72        "/alignment-files/IGVFFI4920WSOC/"
73    ],
74    "integrated_in": [],
75    "lab": {
76        "@id": "/labs/jason-buenrostro/",
77        "title": "Jason Buenrostro, Broad"
78    },
79    "loci_list_for": [],
80    "md5sum": "59d6509fae92468d490a82c7b987100a",
81    "quality_metrics": [],
82    "release_timestamp": "2025-03-28T21:22:26.963748+00:00",
83    "s3_uri": "s3://igvf-files/2025/03/13/aed609d3-1806-4b07-b669-b65813fa23be/IGVFFI3482LXVK.yaml.gz",
84    "schema_version": "7",
85    "seqspec_of": [
86        "/sequence-files/IGVFFI2155GZZK/",
87        "/sequence-files/IGVFFI4097YIVB/"
88    ],
89    "status": "released",
90    "submitted_by": {
91        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
92        "title": "Siddarth Wekhande"
93    },
94    "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/pilot-mouse-brain-new-pkr/SS-LS_5369_seqspec.yaml.gz",
95    "summary": "seqspec of IGVFFI2155GZZK, IGVFFI4097YIVB",
96    "upload_status": "validated",
97    "uuid": "aed609d3-1806-4b07-b669-b65813fa23be",
98    "validate_onlist_files": true
99}