IGVFFI3444VJCS

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI3444VJCS/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI3444VJCS",
    "assay_titles": [
        "lentiMPRA"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011966/",
        "component": "functional characterization"
    },
    "content_md5sum": "396f710577bb6e03d8a98af89a8e16f4",
    "content_type": "seqspec",
    "creation_timestamp": "2024-11-22T10:21:33.547133+00:00",
    "derived_from": [
        "/tabular-files/IGVFFI4651HMEA/"
    ],
    "description": "Sequence specification of DNA counts",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS4302OZMS/",
        "accession": "IGVFDS4302OZMS",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM0720XHJA/",
                "accession": "IGVFSM0720XHJA",
                "classifications": [
                    "pooled cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/CL_0011020/",
                        "status": "released",
                        "term_name": "neural progenitor cell"
                    }
                ],
                "status": "released",
                "summary": "neural progenitor pooled cell specimen, Homo sapiens transfected with a reporter library",
                "taxa": "Homo sapiens"
            }
        ],
        "status": "released",
        "summary": "lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder"
    },
    "file_size": 1294,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI3444VJCS/@@download/IGVFFI3444VJCS.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/nadav-ahituv/",
        "title": "Nadav Ahituv, UCSF"
    },
    "loci_list_for": [],
    "md5sum": "b5ff3e90cc3ea3e7b93f4c81b27dc268",
    "release_timestamp": "2025-01-09T20:34:27.180631+00:00",
    "s3_uri": "s3://igvf-files/2024/11/22/b51bd82f-d3d2-4b69-84c4-6ad5e9daf0b9/IGVFFI3444VJCS.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI9175EUYL/",
        "/sequence-files/IGVFFI7520JNOX/",
        "/sequence-files/IGVFFI8506ZTML/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/3ad3479d-753b-4293-9c09-c0dcabfd0ddb/",
        "title": "Max Schubach"
    },
    "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/counts/seqspec/IGVF_shendure_asd_count_rep2_dna.yaml.gz\"",
    "submitter_comment": "Replicate 2",
    "summary": "seqspec of IGVFFI9175EUYL, IGVFFI7520JNOX, IGVFFI8506ZTML",
    "upload_status": "validated",
    "uuid": "b51bd82f-d3d2-4b69-84c4-6ad5e9daf0b9"
}