IGVFFI3299STRS

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI3299STRS/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3299STRS",
10    "aliases": [
11        "jay-shendure:seqspec_of_set_IGVFDS8758JSUK-reseq"
12    ],
13    "assay_titles": [
14        "MPRA (scQer)"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011966/",
19        "component": "functional characterization"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "65413627af67e9846b6e8a7eb7e18b43",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-24T19:35:41.801973+00:00",
25    "derived_manually": false,
26    "file_format": "yaml",
27    "file_set": {
28        "@id": "/auxiliary-sets/IGVFDS8758JSUK/",
29        "@type": [
30            "AuxiliarySet",
31            "FileSet",
32            "Item"
33        ],
34        "accession": "IGVFDS8758JSUK",
35        "data_use_limitation_summaries": [
36            "no certificate"
37        ],
38        "file_set_type": "circularized RNA barcode detection",
39        "samples": [
40            {
41                "@id": "/in-vitro-systems/IGVFSM4704LAYE/",
42                "@type": [
43                    "InVitroSystem",
44                    "Biosample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM4704LAYE",
49                "classifications": [
50                    "differentiated cell specimen"
51                ],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/EFO_0004038/",
55                        "status": "released",
56                        "term_name": "mouse embryonic stem cell"
57                    }
58                ],
59                "status": "released",
60                "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2) transfected with a reporter library",
61                "targeted_sample_term": {
62                    "@id": "/sample-terms/UBERON_0014374/",
63                    "status": "released",
64                    "term_name": "embryoid body"
65                },
66                "taxa": "Mus musculus"
67            }
68        ],
69        "status": "released",
70        "summary": "circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci"
71    },
72    "file_size": 1311,
73    "gene_list_for": [],
74    "href": "/configuration-files/IGVFFI3299STRS/@@download/IGVFFI3299STRS.yaml.gz",
75    "input_file_for": [],
76    "integrated_in": [],
77    "lab": {
78        "@id": "/labs/jay-shendure/",
79        "title": "Jay Shendure, UW"
80    },
81    "loci_list_for": [],
82    "md5sum": "cf67680c01b091956438c5119136346b",
83    "quality_metrics": [],
84    "release_timestamp": "2025-05-24T00:14:10.893183+00:00",
85    "s3_uri": "s3://igvf-files/2025/03/24/0c77c7ef-5998-47c7-80c1-c55035f5dd02/IGVFFI3299STRS.yaml.gz",
86    "schema_version": "8",
87    "seqspec_of": [
88        "/sequence-files/IGVFFI3401EQXB/",
89        "/sequence-files/IGVFFI7403YFYV/",
90        "/sequence-files/IGVFFI2872BDYW/"
91    ],
92    "status": "released",
93    "submitted_by": {
94        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
95        "title": "Beth Martin"
96    },
97    "submitted_file_name": "/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/scQers/scQers_IGVFDS8758JSUK_oBC_reseq_seqspec_v3.yaml.gz",
98    "summary": "seqspec of IGVFFI3401EQXB, IGVFFI7403YFYV, IGVFFI2872BDYW",
99    "upload_status": "validated",
100    "uuid": "0c77c7ef-5998-47c7-80c1-c55035f5dd02",
101    "validate_onlist_files": false
102}