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INDEXED
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ConfigurationFile
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IGVFFI3285XVSJ
IGVFFI3285XVSJ
released
validated
Json view
File Set
IGVFDS1681DUIN
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI8966HZNP, IGVFFI0244DQNM, IGVFFI9561YTLI, IGVFFI3455XARV
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp13_atac_10x1_NGS2
md5sum
72f625a316d17fa91d5e2e8f17ff5f3b
Content MD5sum
94adce43e18b239440c4934e3a1fe535
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp13_atac_10x1_NGS2_atac_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0244DQNM
fastq
reads
1
Illumina NovaSeq X
22JL3GLT3
2
2.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3455XARV
fastq
reads
1
Read 1
Illumina NovaSeq X
22JL3GLT3
2
9.2 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8966HZNP
fastq
reads
1
Read 2
Illumina NovaSeq X
22JL3GLT3
2
9.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9561YTLI
fastq
reads
1
Barcode index
Illumina NovaSeq X
22JL3GLT3
2
5.0 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM6422YWWA
MultiplexedSample
left coronary artery
coronary artery disorder
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples