IGVFFI3199RTIG

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI3199RTIG/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI3199RTIG",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp3_multi_10x2_NGS1"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "7cf3d04b33954368f1555b9cd45beac5",
    "content_type": "seqspec",
    "creation_timestamp": "2024-09-18T02:36:36.526280+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/auxiliary-sets/IGVFDS3579YOKV/",
        "accession": "IGVFDS3579YOKV",
        "file_set_type": "lipid-conjugated oligo sequencing",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM8818QZOF/",
                "accession": "IGVFSM8818QZOF",
                "classifications": [
                    "cell line",
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0001187/",
                        "status": "released",
                        "term_name": "HepG2"
                    },
                    {
                        "@id": "/sample-terms/EFO_0003045/",
                        "status": "released",
                        "term_name": "H9"
                    },
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
    },
    "file_size": 1335,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI3199RTIG/@@download/IGVFFI3199RTIG.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "0ba3f2d5b2b5b9ac581799a05a6f6828",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:10:54.752940+00:00",
    "s3_uri": "s3://igvf-files/2024/09/18/06e1543f-0798-49e6-bd3c-43f0bfafc182/IGVFFI3199RTIG.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI0656XWJG/",
        "/sequence-files/IGVFFI8019ICEK/",
        "/sequence-files/IGVFFI7813XHNH/",
        "/sequence-files/IGVFFI5190GWAT/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp3_multi_10x2_NGS1_multi_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI0656XWJG, IGVFFI8019ICEK, IGVFFI7813XHNH, IGVFFI5190GWAT",
    "upload_status": "validated",
    "uuid": "06e1543f-0798-49e6-bd3c-43f0bfafc182",
    "validate_onlist_files": false
}