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INDEXED
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ConfigurationFile
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IGVFFI3192SXKK
IGVFFI3192SXKK
released
validated
Json view
File Set
IGVFDS4853JTJJ
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI0980ARAR, IGVFFI2806AYVZ, IGVFFI8036LAGY, IGVFFI2024VPLF
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp11_atac_10x3_NGS2
md5sum
58ecd0a4a2554bc6d16d1dd30c4cb104
Content MD5sum
a426568307a6900366ebffb96006fa9b
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp11_atac_10x3_NGS2_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0980ARAR
fastq
reads
1
Read 1
Illumina NovaSeq X
225L7NLT3
2
8.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2024VPLF
fastq
reads
1
Illumina NovaSeq X
225L7NLT3
2
1.8 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2806AYVZ
fastq
reads
1
Barcode index
Illumina NovaSeq X
225L7NLT3
2
4.3 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8036LAGY
fastq
reads
1
Read 2
Illumina NovaSeq X
225L7NLT3
2
8.0 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM6160ZDRZ
MultiplexedSample
GM25256 (WTC-11)
,
H7-hESC
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford