IGVFFI3171JACA

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI3171JACA/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3171JACA",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_mouse_bridge_104_atac"
12    ],
13    "assay_titles": [
14        "10x multiome"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "b55a9bd041f88bd0b3e96fb3d4fb4885",
23    "content_type": "seqspec",
24    "creation_timestamp": "2024-09-18T02:45:38.762387+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS2556FUQS/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS2556FUQS",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002762/",
36            "term_name": "single-nucleus ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/tissues/IGVFSM8448JQZQ/",
42                "@type": [
43                    "Tissue",
44                    "Biosample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM8448JQZQ",
49                "classifications": [
50                    "tissue"
51                ],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/NTR_0000646/",
55                        "status": "released",
56                        "term_name": "left cerebral cortex"
57                    }
58                ],
59                "status": "released",
60                "summary": "Mus musculus CAST/EiJ (female, 10 weeks) left cerebral cortex tissue",
61                "taxa": "Mus musculus"
62            }
63        ],
64        "status": "released",
65        "summary": "single-nucleus ATAC-seq (10x multiome)"
66    },
67    "file_size": 1377,
68    "gene_list_for": [],
69    "href": "/configuration-files/IGVFFI3171JACA/@@download/IGVFFI3171JACA.yaml.gz",
70    "input_file_for": [],
71    "integrated_in": [],
72    "lab": {
73        "@id": "/labs/ansuman-satpathy/",
74        "title": "Ansuman Satpathy, Stanford"
75    },
76    "loci_list_for": [],
77    "md5sum": "2552eca86dfd7cf97610937b61a270b2",
78    "quality_metrics": [],
79    "release_timestamp": "2025-03-07T01:18:39.914334+00:00",
80    "s3_uri": "s3://igvf-files/2024/09/18/1af628fd-2119-4b6b-977d-a85f37c57ed2/IGVFFI3171JACA.yaml.gz",
81    "schema_version": "7",
82    "seqspec_of": [
83        "/sequence-files/IGVFFI0995JOSZ/",
84        "/sequence-files/IGVFFI2852IKKO/",
85        "/sequence-files/IGVFFI6612BHWY/",
86        "/sequence-files/IGVFFI7580CYCQ/"
87    ],
88    "status": "released",
89    "submitted_by": {
90        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
91        "title": "Christopher Mcginnis"
92    },
93    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_mouse_bridge_104_atac_atac_seqspec.yaml.gz",
94    "summary": "seqspec of IGVFFI0995JOSZ, IGVFFI2852IKKO, IGVFFI6612BHWY, IGVFFI7580CYCQ",
95    "upload_status": "validated",
96    "uuid": "1af628fd-2119-4b6b-977d-a85f37c57ed2",
97    "validate_onlist_files": true
98}