IGVFFI3155TEYG

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI3155TEYG/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI3155TEYG",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp5_atac_10x2_NGS2"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "34cfbe601c5e43edb12f868a73efb081",
    "content_type": "seqspec",
    "creation_timestamp": "2024-09-18T02:38:50.744463+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS8186IYBF/",
        "accession": "IGVFDS8186IYBF",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM3202SKCS/",
                "accession": "IGVFSM3202SKCS",
                "classifications": [
                    "cell line",
                    "differentiated cell specimen",
                    "gastruloid",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0001184/",
                        "status": "released",
                        "term_name": "HEK293T"
                    },
                    {
                        "@id": "/sample-terms/EFO_0003042/",
                        "status": "released",
                        "term_name": "H1-hESC"
                    },
                    {
                        "@id": "/sample-terms/EFO_0003045/",
                        "status": "released",
                        "term_name": "H9"
                    },
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
    },
    "file_size": 1377,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI3155TEYG/@@download/IGVFFI3155TEYG.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "152d272e00686f669bdfa38380c7e545",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:11:53.177862+00:00",
    "s3_uri": "s3://igvf-files/2024/09/18/bf2f2f43-4f99-4d89-801f-d2ffefeb1d91/IGVFFI3155TEYG.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI9878WPNT/",
        "/sequence-files/IGVFFI3907FBNB/",
        "/sequence-files/IGVFFI1467QLZW/",
        "/sequence-files/IGVFFI1236DWEM/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp5_atac_10x2_NGS2_atac_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI9878WPNT, IGVFFI3907FBNB, IGVFFI1467QLZW, IGVFFI1236DWEM",
    "upload_status": "validated",
    "uuid": "bf2f2f43-4f99-4d89-801f-d2ffefeb1d91",
    "validate_onlist_files": true
}