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IGVFFI3146GSKQ

released
validated
File Set
IGVFDS3171OFHP(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
seqspec of IGVFFI9133BYDP, IGVFFI3790XJRX, IGVFFI5644SHUR
File Format
yaml
Content Type
seqspec
Aliases
jesse-engreitz:seqspecfile_rna_CRUDO_TAPseq_Auxin0hrs-Rep1-S3
md5sum
dd1110d1de8fd4d11286bc51ef4073c9
Content MD5sum
9a8d3e414cdffbae62997af89b0fd63a
File Size
1.0 KB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin0hrs-Rep1-S3.rna.yaml.gz

seqspec File Of

3 items
fastq
reads
1
3
375 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
3
2.8 GB
Jesse Engreitz, Stanford
validated
fastq
reads
1
3
1.3 GB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford