IGVFFI3059MMOK

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI3059MMOK/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3059MMOK",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_exp17_multi_10x3_NGS1"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011972/",
19        "component": "functional characterization"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "5bfbf0a9ca325ab2234fdb3f15db4e41",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-02-26T01:41:21.689232+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/auxiliary-sets/IGVFDS7632NJZU/",
28        "@type": [
29            "AuxiliarySet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS7632NJZU",
34        "file_set_type": "lipid-conjugated oligo sequencing",
35        "samples": [
36            {
37                "@id": "/multiplexed-samples/IGVFSM6345RLEH/",
38                "@type": [
39                    "MultiplexedSample",
40                    "Sample",
41                    "Item"
42                ],
43                "accession": "IGVFSM6345RLEH",
44                "classifications": [
45                    "differentiated cell specimen",
46                    "multiplexed sample"
47                ],
48                "disease_terms": [],
49                "modifications": [],
50                "sample_terms": [
51                    {
52                        "@id": "/sample-terms/EFO_0009320/",
53                        "status": "released",
54                        "term_name": "RUES2"
55                    }
56                ],
57                "status": "released",
58                "summary": "multiplexed sample: Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 2 days; Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 1 day; ... and 10 more samples",
59                "taxa": "Homo sapiens",
60                "treatments": []
61            }
62        ],
63        "status": "released",
64        "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
65    },
66    "file_size": 1334,
67    "gene_list_for": [],
68    "href": "/configuration-files/IGVFFI3059MMOK/@@download/IGVFFI3059MMOK.yaml.gz",
69    "input_file_for": [],
70    "integrated_in": [],
71    "lab": {
72        "@id": "/labs/ansuman-satpathy/",
73        "title": "Ansuman Satpathy, Stanford"
74    },
75    "loci_list_for": [],
76    "md5sum": "b316a8eeb74cf5aee502f83e7bd7ddfd",
77    "quality_metrics": [],
78    "release_timestamp": "2025-03-07T01:16:55.395745+00:00",
79    "s3_uri": "s3://igvf-files/2025/02/26/db9bfaf6-ac5a-4c2a-be16-b725e870365f/IGVFFI3059MMOK.yaml.gz",
80    "schema_version": "7",
81    "seqspec_of": [
82        "/sequence-files/IGVFFI0249UVTL/",
83        "/sequence-files/IGVFFI7267SMPA/",
84        "/sequence-files/IGVFFI2541DVGK/",
85        "/sequence-files/IGVFFI3633NOEG/"
86    ],
87    "status": "released",
88    "submitted_by": {
89        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
90        "title": "Christopher Mcginnis"
91    },
92    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp17_multi_10x3_NGS1_multi_seqspec.yaml.gz",
93    "summary": "seqspec of IGVFFI0249UVTL, IGVFFI7267SMPA, IGVFFI2541DVGK, IGVFFI3633NOEG",
94    "upload_status": "validated",
95    "uuid": "db9bfaf6-ac5a-4c2a-be16-b725e870365f",
96    "validate_onlist_files": false
97}