{
"@context": "/terms/",
"@id": "/configuration-files/IGVFFI2971NFJT/",
"@type": [
"ConfigurationFile",
"File",
"Item"
],
"accession": "IGVFFI2971NFJT",
"aliases": [
"jesse-engreitz:seqspecfile_CRUDO_SSFA2-Auxin0hrs-FF1-BinC-PCR2-Rep1_S9"
],
"assay_titles": [
"CRISPR FlowFISH screen"
],
"audit": {},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"content_md5sum": "015b1db4ff0842ab921f722e522e9a9a",
"content_type": "seqspec",
"creation_timestamp": "2024-06-11T20:37:36.322023+00:00",
"file_format": "yaml",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS5620SSUW/",
"accession": "IGVFDS5620SSUW",
"file_set_type": "gRNA sequencing",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM7889BDAF/",
"accession": "IGVFSM7889BDAF",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"term_name": "HCT116"
}
],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of SSFA2) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"summary": "gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci"
},
"file_size": 911,
"gene_list_for": [],
"href": "/configuration-files/IGVFFI2971NFJT/@@download/IGVFFI2971NFJT.yaml.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"loci_list_for": [],
"md5sum": "d450bae842996a15dd8c1eb263bba954",
"release_timestamp": "2024-07-10T20:23:55.836160+00:00",
"s3_uri": "s3://igvf-files/2024/06/11/9233e2ae-4e15-4f2a-9156-0b4a1d2f5ed1/IGVFFI2971NFJT.yaml.gz",
"schema_version": "7",
"seqspec_of": [
"/sequence-files/IGVFFI6031KNOJ/"
],
"status": "released",
"submitted_by": {
"@id": "/users/100f06c6-83a7-4b4d-9dfd-053a1829773b/",
"title": "Benjamin Doughty"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.SSFA2-Auxin0hrs-FF1-BinC-PCR2-Rep1_S9.yaml",
"summary": "seqspec of IGVFFI6031KNOJ",
"upload_status": "validated",
"uuid": "9233e2ae-4e15-4f2a-9156-0b4a1d2f5ed1"
}