{
"@context": "/terms/",
"@id": "/configuration-files/IGVFFI2855EAJK/",
"@type": [
"ConfigurationFile",
"File",
"Item"
],
"accession": "IGVFFI2855EAJK",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp18_rna_10x1_NGS1"
],
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"checkfiles_version": "v16",
"content_md5sum": "70e74a844f2b0041533f178c4f74294c",
"content_type": "seqspec",
"creation_timestamp": "2025-02-26T01:45:36.434229+00:00",
"file_format": "yaml",
"file_set": {
"@id": "/measurement-sets/IGVFDS1210CYWP/",
"accession": "IGVFDS1210CYWP",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM4392KEFB/",
"accession": "IGVFSM4392KEFB",
"classifications": [
"cell line",
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001196/",
"status": "released",
"term_name": "IMR-90"
},
{
"@id": "/sample-terms/EFO_0001203/",
"status": "released",
"term_name": "MCF-7"
},
{
"@id": "/sample-terms/EFO_0002824/",
"status": "released",
"term_name": "HCT116"
},
{
"@id": "/sample-terms/EFO_0003072/",
"status": "released",
"term_name": "SK-N-SH"
},
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
},
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples",
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/ff03c6ff-c1f5-4b47-bd9d-62f22d5794c5/",
"purpose": "perturbation",
"status": "in progress",
"summary": "Treatment of 3 μM Yoda1 for 4 hours",
"treatment_term_name": "Yoda1"
}
]
}
],
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
"file_size": 1393,
"gene_list_for": [],
"href": "/configuration-files/IGVFFI2855EAJK/@@download/IGVFFI2855EAJK.yaml.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "af8b5996c9981419d17f07b232e473c1",
"quality_metrics": [],
"release_timestamp": "2025-03-07T01:18:14.763105+00:00",
"s3_uri": "s3://igvf-files/2025/02/26/f387e29e-64bf-46ab-b6cd-d4d464792e06/IGVFFI2855EAJK.yaml.gz",
"schema_version": "7",
"seqspec_of": [
"/sequence-files/IGVFFI6526OBMG/",
"/sequence-files/IGVFFI8737QQSV/",
"/sequence-files/IGVFFI5616SZRW/",
"/sequence-files/IGVFFI1988QWCI/"
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp18_rna_10x1_NGS1_rna_seqspec.yaml.gz",
"summary": "seqspec of IGVFFI6526OBMG, IGVFFI8737QQSV, IGVFFI5616SZRW, IGVFFI1988QWCI",
"upload_status": "validated",
"uuid": "f387e29e-64bf-46ab-b6cd-d4d464792e06",
"validate_onlist_files": true
}