{
"@context": "/terms/",
"@id": "/configuration-files/IGVFFI2775UGHY/",
"@type": [
"ConfigurationFile",
"File",
"Item"
],
"accession": "IGVFFI2775UGHY",
"aliases": [
"jesse-engreitz:seqspecfile_CRUDO_FAM3C_Auxin0hrs-FF2-BinB-PCR2-Rep1_S128"
],
"assay_titles": [
"CRISPR FlowFISH screen"
],
"audit": {},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"content_md5sum": "ca3bc9fdc5e4d6a782060934de6fc4f8",
"content_type": "seqspec",
"creation_timestamp": "2024-06-11T20:43:02.488282+00:00",
"file_format": "yaml",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS4010VNGF/",
"accession": "IGVFDS4010VNGF",
"file_set_type": "gRNA sequencing",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM3569TFCR/",
"accession": "IGVFSM3569TFCR",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/",
"modality": "interference",
"status": "released",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
},
{
"@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
"modality": "degradation",
"status": "released",
"summary": "inactive AID system targeting RAD21"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"status": "released",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of FAM3C) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci"
},
"file_size": 915,
"gene_list_for": [],
"href": "/configuration-files/IGVFFI2775UGHY/@@download/IGVFFI2775UGHY.yaml.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"loci_list_for": [],
"md5sum": "3dcdd694cc6e4a372b2db94aa6dd0e75",
"release_timestamp": "2024-07-10T20:11:29.436146+00:00",
"s3_uri": "s3://igvf-files/2024/06/11/36624d58-64f2-4f30-b001-49115769d501/IGVFFI2775UGHY.yaml.gz",
"schema_version": "7",
"seqspec_of": [
"/sequence-files/IGVFFI5330ZBZF/"
],
"status": "released",
"submitted_by": {
"@id": "/users/100f06c6-83a7-4b4d-9dfd-053a1829773b/",
"title": "Benjamin Doughty"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.FAM3C_Auxin0hrs-FF2-BinB-PCR2-Rep1_S128.yaml",
"summary": "seqspec of IGVFFI5330ZBZF",
"upload_status": "validated",
"uuid": "36624d58-64f2-4f30-b001-49115769d501"
}