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INDEXED
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ConfigurationFile
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IGVFFI2728HLVX
IGVFFI2728HLVX
released
validated
Json view
File Set
IGVFDS9859SAHD
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI3746JMAE, IGVFFI1287UCCZ, IGVFFI1269DVSB, IGVFFI5402LZTX
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp18_rna_10x2_NGS1
md5sum
c37bddc186a93074bbcef026fa6ca96c
Content MD5sum
71b06b85401bfd87237be88686c8d7d2
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp18_rna_10x2_NGS1_rna_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1269DVSB
fastq
reads
1
Illumina NovaSeq X
22FL7YLT4
1
3.9 GB
Ansuman Satpathy, Stanford
validated
IGVFFI1287UCCZ
fastq
reads
1
Read 2
Illumina NovaSeq X
22FL7YLT4
1
44 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3746JMAE
fastq
reads
1
Read 1
Illumina NovaSeq X
22FL7YLT4
1
53 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5402LZTX
fastq
reads
1
Illumina NovaSeq X
22FL7YLT4
1
3.8 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9642EHZY
MultiplexedSample
HCT116
,
HUDEP-2
,
IMR-90
,
MCF-7
,
SK-N-SH
,
TeloHAEC
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford