IGVFFI2689KSCB

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI2689KSCB/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2689KSCB",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_3827_seqspec"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "40e4ac1b8236e01f504f4872aa6f29e7",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-13T17:54:31.035059+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS1816FCQL/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS1816FCQL",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002631/",
36            "term_name": "single-cell RNA sequencing assay"
37        },
38        "data_use_limitation_summaries": [
39            "no certificate"
40        ],
41        "file_set_type": "experimental data",
42        "samples": [
43            {
44                "@id": "/tissues/IGVFSM2881UHTO/",
45                "@type": [
46                    "Tissue",
47                    "Biosample",
48                    "Sample",
49                    "Item"
50                ],
51                "accession": "IGVFSM2881UHTO",
52                "classifications": [
53                    "tissue"
54                ],
55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/UBERON_0000955/",
58                        "status": "released",
59                        "term_name": "brain"
60                    }
61                ],
62                "status": "released",
63                "summary": "Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 434)",
64                "taxa": "Mus musculus"
65            }
66        ],
67        "status": "released",
68        "summary": "single-cell RNA sequencing assay (SHARE-seq)"
69    },
70    "file_size": 1288,
71    "gene_list_for": [],
72    "href": "/configuration-files/IGVFFI2689KSCB/@@download/IGVFFI2689KSCB.yaml.gz",
73    "input_file_for": [
74        "/matrix-files/IGVFFI0400PXGY/",
75        "/matrix-files/IGVFFI8130LOBS/"
76    ],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/jason-buenrostro/",
80        "title": "Jason Buenrostro, Broad"
81    },
82    "loci_list_for": [],
83    "md5sum": "0bb99cf71c7726b324d10463e37087ea",
84    "quality_metrics": [],
85    "release_timestamp": "2025-03-28T21:22:20.586590+00:00",
86    "s3_uri": "s3://igvf-files/2025/03/13/1b72f65a-ff9c-41a4-ab78-6c2337c00cb8/IGVFFI2689KSCB.yaml.gz",
87    "schema_version": "7",
88    "seqspec_of": [
89        "/sequence-files/IGVFFI3151GLAE/",
90        "/sequence-files/IGVFFI1562DYER/"
91    ],
92    "status": "released",
93    "submitted_by": {
94        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
95        "title": "Siddarth Wekhande"
96    },
97    "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/pilot-mouse-brain-new-pkr/SS-LS_3827_seqspec.yaml.gz",
98    "summary": "seqspec of IGVFFI3151GLAE, IGVFFI1562DYER",
99    "upload_status": "validated",
100    "uuid": "1b72f65a-ff9c-41a4-ab78-6c2337c00cb8",
101    "validate_onlist_files": true
102}