IGVFFI2644ZPAD

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI2644ZPAD/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2644ZPAD",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_8423_seqspec"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "023a99e7b3b0967ff6bf064b3cb41b44",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-07T19:57:46.760725+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS3074DPDQ/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS3074DPDQ",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002631/",
36            "term_name": "single-cell RNA sequencing assay"
37        },
38        "data_use_limitation_summaries": [
39            "no certificate"
40        ],
41        "file_set_type": "experimental data",
42        "samples": [
43            {
44                "@id": "/tissues/IGVFSM7652DCKY/",
45                "@type": [
46                    "Tissue",
47                    "Biosample",
48                    "Sample",
49                    "Item"
50                ],
51                "accession": "IGVFSM7652DCKY",
52                "classifications": [
53                    "tissue"
54                ],
55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/NTR_0000646/",
58                        "status": "released",
59                        "term_name": "left cerebral cortex"
60                    }
61                ],
62                "status": "released",
63                "summary": "Mus musculus C57BL/6J (female) left cerebral cortex tissue (cellular sub pool: SS-PKR 604)",
64                "taxa": "Mus musculus"
65            }
66        ],
67        "status": "released",
68        "summary": "single-cell RNA sequencing assay (SHARE-seq)"
69    },
70    "file_size": 1286,
71    "gene_list_for": [],
72    "href": "/configuration-files/IGVFFI2644ZPAD/@@download/IGVFFI2644ZPAD.yaml.gz",
73    "input_file_for": [
74        "/matrix-files/IGVFFI8395RDDT/",
75        "/matrix-files/IGVFFI1561DRGQ/"
76    ],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/jason-buenrostro/",
80        "title": "Jason Buenrostro, Broad"
81    },
82    "loci_list_for": [],
83    "md5sum": "4741326c98895383107945018c18c6da",
84    "quality_metrics": [],
85    "release_timestamp": "2025-03-28T21:18:11.412859+00:00",
86    "s3_uri": "s3://igvf-files/2025/03/07/6f7973f7-886a-4bba-988e-9270fb3d4ee1/IGVFFI2644ZPAD.yaml.gz",
87    "schema_version": "7",
88    "seqspec_of": [
89        "/sequence-files/IGVFFI3005GWOJ/",
90        "/sequence-files/IGVFFI9047CYME/"
91    ],
92    "status": "released",
93    "submitted_by": {
94        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
95        "title": "Siddarth Wekhande"
96    },
97    "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/mouse-bridge/SS-LS_8423_seqspec.yaml.gz",
98    "summary": "seqspec of IGVFFI3005GWOJ, IGVFFI9047CYME",
99    "upload_status": "validated",
100    "uuid": "6f7973f7-886a-4bba-988e-9270fb3d4ee1",
101    "validate_onlist_files": true
102}