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IGVFFI2574ZRKS

released
validated
File Set
IGVFDS3171OFHP(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
seqspec of IGVFFI2851WWMV, IGVFFI4406QWXH, IGVFFI3618MDPB
File Format
yaml
Content Type
seqspec
Aliases
jesse-engreitz:seqspecfile_rna_CRUDO_TAPseq_Auxin0hrs-Rep1-S2
md5sum
412eb69dd7d6c28c1bd8bd5c01a58246
Content MD5sum
0fb1b0ff8cae3508b25a706b923074f6
File Size
1.0 KB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin0hrs-Rep1-S2.rna.yaml.gz

seqspec File Of

3 items
fastq
reads
1
2
1.2 GB
Jesse Engreitz, Stanford
validated
fastq
reads
1
2
2.7 GB
Jesse Engreitz, Stanford
validated
fastq
reads
1
2
362 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford