IGVFFI2515MWJX

released
validated
{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI2515MWJX/",
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    "accession": "IGVFFI2515MWJX",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp5_atac_10x3_NGS1"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
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    "checkfiles_version": "v16",
    "content_md5sum": "6e346fb4a49890b6ae07278b7e48465a",
    "content_type": "seqspec",
    "creation_timestamp": "2024-09-18T02:39:02.090105+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS1261CJEE/",
        "accession": "IGVFDS1261CJEE",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM7875RUGJ/",
                "accession": "IGVFSM7875RUGJ",
                "classifications": [
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                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0001184/",
                        "status": "released",
                        "term_name": "HEK293T"
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                    {
                        "@id": "/sample-terms/EFO_0003042/",
                        "status": "released",
                        "term_name": "H1-hESC"
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                    {
                        "@id": "/sample-terms/EFO_0003045/",
                        "status": "released",
                        "term_name": "H9"
                    },
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
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    "file_size": 1377,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI2515MWJX/@@download/IGVFFI2515MWJX.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
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        "title": "Ansuman Satpathy, Stanford"
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    "md5sum": "ce73c5994192bc6a3138310a8d6c631f",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:12:02.861020+00:00",
    "s3_uri": "s3://igvf-files/2024/09/18/50f8b7a8-0e57-49ff-a477-55fa69eeb41c/IGVFFI2515MWJX.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI1592SCBF/",
        "/sequence-files/IGVFFI3517HUQJ/",
        "/sequence-files/IGVFFI7723IYOV/",
        "/sequence-files/IGVFFI6903ZGNS/"
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    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp5_atac_10x3_NGS1_atac_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI1592SCBF, IGVFFI3517HUQJ, IGVFFI7723IYOV, IGVFFI6903ZGNS",
    "upload_status": "validated",
    "uuid": "50f8b7a8-0e57-49ff-a477-55fa69eeb41c",
    "validate_onlist_files": true
}