IGVFFI2455XYPU

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI2455XYPU/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2455XYPU",
10    "aliases": [
11        "chongyuan-luo:ys3b_snATAC_L3_seqspec"
12    ],
13    "assay_titles": [
14        "10x multiome"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012079/",
19        "component": "networks"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "f64531ccbba2804c669632eae81bf445",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-19T00:09:17.184663+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS3441CZQC/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS3441CZQC",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002762/",
36            "term_name": "single-nucleus ATAC-seq"
37        },
38        "controlled_access": false,
39        "data_use_limitation_summaries": [
40            "No limitations"
41        ],
42        "file_set_type": "experimental data",
43        "samples": [
44            {
45                "@id": "/multiplexed-samples/IGVFSM8294LIUF/",
46                "@type": [
47                    "MultiplexedSample",
48                    "Sample",
49                    "Item"
50                ],
51                "accession": "IGVFSM8294LIUF",
52                "classifications": [
53                    "primary cell",
54                    "reprogrammed cell specimen",
55                    "multiplexed sample"
56                ],
57                "disease_terms": [],
58                "modifications": [],
59                "sample_terms": [
60                    {
61                        "@id": "/sample-terms/CL_0000057/",
62                        "status": "released",
63                        "term_name": "fibroblast"
64                    }
65                ],
66                "status": "released",
67                "summary": "multiplexed sample: Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 1 day; Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 7 days; ... and 2 more samples",
68                "taxa": "Homo sapiens",
69                "treatments": []
70            }
71        ],
72        "status": "released",
73        "summary": "single-nucleus ATAC-seq (10x multiome)"
74    },
75    "file_size": 1292,
76    "gene_list_for": [],
77    "href": "/configuration-files/IGVFFI2455XYPU/@@download/IGVFFI2455XYPU.yaml.gz",
78    "input_file_for": [],
79    "integrated_in": [],
80    "lab": {
81        "@id": "/labs/kathrin-plath/",
82        "title": "Kathrin Plath, UCLA"
83    },
84    "loci_list_for": [],
85    "md5sum": "a71b37211a55d5701775325f5490b16b",
86    "quality_metrics": [],
87    "release_timestamp": "2025-03-27T21:33:09.989143+00:00",
88    "s3_uri": "s3://igvf-files/2025/03/19/556d8539-8161-4ba1-8555-66264eabb639/IGVFFI2455XYPU.yaml.gz",
89    "schema_version": "7",
90    "seqspec_of": [
91        "/sequence-files/IGVFFI7881VOQF/",
92        "/sequence-files/IGVFFI3968KNNB/",
93        "/sequence-files/IGVFFI1348AFUY/",
94        "/sequence-files/IGVFFI4048IXSL/"
95    ],
96    "status": "released",
97    "submitted_by": {
98        "@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
99        "title": "Terence Li"
100    },
101    "submitted_file_name": "/home/ec2-user/igvf/submit/yaml/year2/multiome/atac/ys3b.L3.yaml.gz",
102    "summary": "seqspec of IGVFFI7881VOQF, IGVFFI3968KNNB, IGVFFI1348AFUY, IGVFFI4048IXSL",
103    "upload_status": "validated",
104    "uuid": "556d8539-8161-4ba1-8555-66264eabb639",
105    "validate_onlist_files": true
106}